1985 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals..., where recent polyploidization occurred and intraspecific ploidy variatio...distinguish between diploids, triploids and tetraploi...und see also the publication at BMC Bioinfo...1975 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pi...ates a de novo phage gene-calling algorithm and assigns p...ative functions to gene calls using protein-, virus-, and pha...1871 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1871 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1868 days ago
1768 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid g...luding HMMER, Exonerate, Erpin and oth...1768 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequence...xperts to refine these approximations by viewing and independently evaluating the data suppo...g curators to inspect genome annotations closely and edi...1767 days ago
1697 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching...setup a fully working Linux web server and to develop and deploy web applications for Bioinformatic...ts, regular expressions, files reading and manipulation et-cetera.1696 days ago