Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic...2542 days ago
2541 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It...2527 days ago
QuorUM: An Error Corrector for Illumina Reads
...s and trimming of unusable sequence. We developed an error correction software called QuorUM. QuorUM is ma...rence assembly is available. QuorUM is distributed as an independent software package and as a module of...2429 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assem...2427 days ago
2423 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...e submission to public sequence databases. DFAST was originally started as an on-...uture. Availability and Implementation The software is implemented in Python 3...icense with external binaries bundled in the software distribution. An on-line ve...2423 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...f CHSs. Results Here we present a Java software CHSMiner that detects CHSs...visualization of the results. We tested the software on both simulated and biolo...tion of genomes. https://github.com/zhenwang100/CHSMiner...2419 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...ceforge.net/projects/rpore/ . A tutorial and further information are available at https://sourceforge.net/p/rpore/wiki/Home/ Contact:mick.watson@roslin.ed.ac.uk2414 days ago
ONT assembly and Illumina polishing pipeline
...Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem. Perform correction...2414 days ago