Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full lo...evolutionarily distant and closely related species. Input formats, automated data upload from the UCSC Gen...2533 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-a...ith computational efficiency, accessibility, and user experience, so that NGS data can be analyzed efficiently e...2528 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classifi...mputed kernel matrix) Weighted SVM for unbalanced data Both C++ and Java ...sion is available. It's also included in some data mining environments: Rap...2520 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relativ...ed 1%) error rate, 100 × coverage Illumina data on average has an error in so...se in the genome. These errors make handling the data more complicated because they...2421 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go thr...h fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/3000/400...2417 days ago
2416 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimension...all the ancestral species within the phylogenetic range of interest. All the data on extant species displayed i...2411 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segmen...oftware on both simulated and biological realistic data and compared its performance with similar existing software and data source. Conclusion CHSM...2411 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detecti...complement to standard bioinformatics analyses prior to submission of genomic data to public repositories. Our a...2407 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (Europ...outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https://gi...2407 days ago