CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of diff...with computational efficiency, accessibility, and user experience, so that NGS data can...2533 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, ...omputed kernel matrix) Weighted SVM for unbalanced data Both C++ and Java ...nsion is available. It's also included in some data mini...2525 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (mo...tised 1%) error rate, 100 × coverage Illumina data on average has an error in so...base in the genome. These errors make handling the data more...2426 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and...C results of each fastq file/pair.Currently it supports processing data from...2422 days ago
2421 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range of interest. All the data on extant species displayed in thi...2416 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...are on both simulated and biological realistic data and compared its performance with similar existing software and data source. Conclusion CHSM...alists and bioinformaticians interested in the structure and evolution of genomes. &n...2416 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA seq...complement to standard bioinformatics analyses prior to submission of genomic data to p...2412 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
...ow. Tulipseed takes as input alignments files of long reads to sparse short seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https://github....2412 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing tech...and build a suite of tools specifically for MinION data. Results: Here we prese...summarize and visualize MinION nanopore sequencing data. As...2412 days ago