1404 days ago
IRscope: an online program to visualize the junction sites of chloroplast genomes
eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust inferences.1311 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphi...ltiple sequence aligned -MSA data), or from several lo...formats generated by some assembler RAD-seq software). DnaSP can estimate several measures of DNA sequence varia...1311 days ago
1280 days ago
Breedbase is a comprehensive breeding management and analysis software
Breedbase is a comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping sampl...1269 days ago
1262 days ago
1262 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein...sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux,...as beta version, via cygwin) Windows. The software is designed to run on multipl...1257 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly...s all other virus de novo assemblers. Availability and implementation: The software runs under Linux, has the GPL...1102 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R...Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through th...1051 days ago