NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262579 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads...t parameters. Circular genome handling to resolve coverage drops near ends of the genome. E-value.&n...o used as an overlapper in a new de novo genome as...2581 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and com...2566 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious...ness and reliability of these particular protein structures.eQuant is a service for stru...2563 days ago
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Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strateg...ely related species. Input formats, automated data upload from the UCSC Genome Br...2538 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of...ces such sequences for ancestral genomes at the internal nodes of the...ion and deletions in addition to genome re...2533 days ago
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Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor availabl...there are more and more researchers sequencing new genomes. These researchers require t...e the functional features of their newly sequenced genomes....2530 days ago