minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...nimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map...2174 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...rently available in KAT: hist: Create an histogram of k-mer occurre...g. gcp: K-mer GC Processor. Creates a matrix of the number of K-...tools are available: density: Creates a density plot from a matrix...thin the assembly. spectra-hist: Creates a K-mer spectra plot for a s...2010 days ago
Instructions for Creating Your Own R Package
...following is a step-by-step guide to creating your own R package. Even beyond this course, youmay find this useful for storing functions you create for your own research or for...1565 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
...s capability with high-performance interactivity over very large or streaming datasets. Bokeh can help anyone who would like to quickly and easily create interactive plots, dashboards...2123 days ago
Heatmapper: web-enabled heat mapping for all
...sualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety of heat maps f...2071 days ago
genoPlotR - plot gene and genome maps project!
...the same segment on the same line, separated by a // Automatic or manual placement of the segments on the plot Add annotations to all the lines Create smart, automatic annotations...1999 days ago
1978 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...;UpSetR shiny app. Here is the source code for the shiny wrapper. A Python package called py-upset to create UpSet plots has been created by GitHub user ImSoErgo...1952 days ago
dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing1928 days ago
plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input...1908 days ago