Results for "PacBio read correction"
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segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, seg...rthermore, segemehl is not limited to a specific read length and is able to map primer- or polyadenylation contaminated reads corr...2970 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and othe...ence from your high-throughput sequencing reads. Cleaning your data in this way is often required: Reads from small-RNA sequencing co...n you don’t want them to be in your reads. Cu...
2967 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...of the paired end library is. Quick links: Installation,Operation, Read mappe...2959 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads gene...2959 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome...paper to create a preliminary assembly, and to create and collate GC content, read cover...
2935 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly anal...pecific charts and tables. GAEMR standardizes input by converting a variety of read types...
2935 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targ...of coverage (or vice versa). Instructions: set the read length/configuration and geno...ames Hadfield. Coverage is calculated as C=LN/G and reads as N...2219 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simul.../deletion (INDEL) polymorphisms, and simulate reads with uniform substitution se...simulated polymorphisms, and writes the true read coord...
2926 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for a given combinati...
2919 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a tax...robial eukaryotes. Kaiju translates reads into amino acid sequences, w...search can process up to millions of reads per...
2921 days ago
