Results for "Protein Structure Prediction and Drug Design"
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotati...in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for iden...fying genomic features (i.e., protein-encoding genes and RNA) a...e of software for identifying and an...2957 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code struct...2951 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...genomes, computes alignments, and then keeps only the parts tha...following the conserved order and orientation of features, such as protein coding genes, non-coding...has parallelization built-in and is desi...incomplete list of questions and answers (yes, these have really...2941 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2931 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2931 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins...x (LPI) score for each genome protein. LPI scores are inversely propo...y for large-scalede novo predictions of horizontally transferred proteins, but can also serve as a...
2901 days ago
- Horizontal gene transfer (HGT), the transfer of genetic materia...rucial for genetic innovation and the evolution of genome archi...enetic signal is usually weak and the nucleotide composition is...al microbiology, where understanding the emergence of new virulent and drug-resistant strains is crucial,...
2901 days ago
- Kaiju is a program for the taxonomic cl...database containing microbial and viral protein sequences. By default, K...l subset of the non-redundant protein database nr used by NCBI...tionally also including fungi and microbial eukaryotes. Kaiju...Menzel, P. et al. (2016) Fast and se...
2896 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of ma...ltiple sequence alignment. Faster and more accurate than CLUSTALW....UPARSE >OTU clustering for 16S and other marker genes. Highly ac...genome alignment. PREFAB >Prot...tiple alignment benchmarks in a standard...2888 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variation...equencing data. The methods are designed to detect shared variati....Genome STRiP looks both across and...sequencing depth, read lengths and mixtures of paired and single-en...
2825 days ago
