ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you hav...1599 days ago
1444 days ago
Ventoy: an open source tool to create bootable USB drive
...rive for ISO/WIM/IMG/VHD(x)/EFI files. With ventoy, you don't need to format the disk over and over, you just need to copy the image files to the USB drive and boot it. You can copy many image files at a time an...1069 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
..., including the first complete human genome. Moreover, we introduce assembly quality and completeness metrics that account for the expected genomic copy numbers. More at https:...791 days ago
409 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuclear genes from medium cov...271 days ago
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot...171 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...on HMM profiles or de novo inference of orthogroups. Through the use of OrthoSNAP, many additional ortholog alignments can be generated from multi-copy gene families. For phylogenet...102 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
...quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuclear genes from medium cov...102 days ago