Results for "nr"
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Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions,...1819 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
...l ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of the Genscale team at Inria. Contact: claire dot lemaitre at inria dot fr Simka and SimkaMin...1783 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
...have more than 10 samples (recommended amount - 40 since we estimate variances from the data). By "cohort" we mean samples sequenced with the same enrichment kit with approximately...1589 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and r...1562 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-...1466 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathwa..., protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.1450 days ago
- ...oduces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Bio...
1369 days ago
URMAP, an ultra-fast read mapper
...ka2 caller. However, GIAB reference variants are shown to be biased against repetitive regions which are difficult to map and may therefore pose an unrealistically easy challenge to...1302 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors i...1274 days ago
- ...real-world problem under the guidance of an experienced mentor in industry or academia. https://bioinformatics.kmutt.ac.th/about.html Duangrudee Tanramluk (Ajarn Wi) uses computat...
1122 days ago
