dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-activ...nd comprehensive CAZyme annotation of a given genome submitted by the user; dbCAN...full-length CAZyme proteins in all sequenced genomes...2593 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate qui...ck, efficient annotation of similar genomes using genomes that have already been annot...hms to map genes from the reference genome (the annotated strain) to the...it was designed for use with viral genomes...2593 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262582 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads...lt parameters. Circular genome handling to resolve coverage drops near ends of the genome. E-value.&n...so used as an overlapper in a new de novo genome...2584 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and co...2569 days ago
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Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but s...2543 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy...sely related species. Input formats, automated data upload from the UCSC Genome...2541 days ago