PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant acc...parisons while providing highest quality results, Contains a fully integrated data filt...2406 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single...2403 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database...2403 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro su...itu Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. &n...2401 days ago
2396 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2392 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and...2389 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis...model which represents the plausible consensus 3D structure of the genome. Deltafeat...hances the integration of genome topology/physical structure with extensive genome annotat...2386 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
While the number of sequenced diploid genomes have been steadily increasing in the last few years, assembly of hi...e of tools for assembling HP genomes from the next generation sequencing (NGS) data. The...2386 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...ssembler for Next Generation Sequencing data geared for large genomes. It...us achieves high performance with large datasets by utilizing lightweight data structures and multi-threaded para...of architectures. https://jgi.doe.gov/data-and-tools/meraculous/ https://arx...2386 days ago