RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembl...map2 alignments to a closely related reference genome. The focus of this tool is on practicality and theref...1709 days ago
simuG: a general-purpose genome simulator
...defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for simulating the full-spect...1677 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it doe...stitched-together pieces of long reads. Racon is a great polishing tool that can be used to clean up...1672 days ago
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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
...her is based on the controlled use of a previously published gap filling tool FGAP and works on all standar...e the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. gapF...1620 days ago
vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vt1616 days ago
EFS: an ensemble feature selection tool implemented as R-package and web-application
The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importan...1616 days ago
HASLR: a tool for rapid genome assembly of long sequencing reads
HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long...1613 days ago
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