circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2331 days ago
2329 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and p...duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely availabl...2325 days ago
Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, inc...Each of these presentations is generated using javascript from a common (JSON) data structure, allowing toggling...2317 days ago
2315 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), an...907 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding informa...six-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad...g the barcoding information contained in linked read data for connecting high-quality s...2310 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis...2303 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cl...Mseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology, d...2294 days ago
2279 days ago