Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are t...rechop performs thorough alignments to effectively find adapters, even at low sequence...2225 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the h...haplotypes by gold standard (long) reads ranbow phylo: for the phylogenetic analysis2222 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the m...2221 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2221 days ago
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BEAP: Blast Extension and Assembly Program
...abases in an attempt to obtain all sequences that overlaps, directly or i...extend" the length of the original sequence for constructing a "full length" sequence for functional analysis, or at least to obtain neighb...scovery and linkage disequilibrium analysis. The confidence of assembling...2212 days ago
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Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence al...optimum alignment (including gaps) of two sequences along their entire length. T...opening and extending gaps in the aligned sequence...2204 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro mean...ools, each of which contains thousands of sparsely sequenced long fragments ranging from...teemers FJ, Shendure J#. In vitro, long-range sequence...2240 days ago