Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, including:...ach of these presentations is generated using javascript from a common (JSON) data structure, allowing toggling...2313 days ago
2311 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), an...904 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information cont...x-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad...the barcoding information contained in linked read data for connecting high-quality s...2306 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis...2300 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster hug...eqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology, d...2290 days ago
2275 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs&n...etwork graphs from R. The main idea is that you should able to take an R data frame with information about...2275 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. It has four di...2291 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. E...2291 days ago