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GenomeRing: alignment visualization based on SuperGenome coordinates
...for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate str...al tools that can visualize genome alignments in a meaningful...uch as experimental data or annotations. However, providing a...2728 days ago
- ...64-bit Linux systems. Binaries and sample data are freely available for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl.edu/people/groups/det...
2726 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lin...on, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation...
2726 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each e...hybrid queuing implementation for MCE supporting normal queues and priority queue...des MCE::Hobo for running code asynchronously. MCE::Shared MC...2715 days ago
iTOL: interactive Tree Of Life
...n online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, whic...2715 days ago
- Harvest is a suite of core-genome alignment and visualization tools...usands of intraspecific microbial genomes, including variant calls,...s. Tools Parsnp - Core-genome alignment and analysis Gin...The Harvest suite for rapid core-genome alignment and visualization...
2715 days ago
- The official documentation of the Perl 6 programming language is now published! Besides online browsing and searching, you can also view everything in one file or contribute by repo...
2713 days ago
- ...t are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map cons...genome, obtain a set of exon annotations. These annotations can...ive as possible. Specificity is not a concern, as incorrect anno...e exons in all or most of the genomes), join neighboring (adjace...
2709 days ago
FSA: Fast Statistical Alignment
...cale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing b...2709 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser.2709 days ago
