CLAW: Chloroplast Long-read Assembly Workflow
CLAW (Chloroplast Long-read Assembly Workflow) is an mostly-automated Snakemake-based workflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads, which are baited out of larger read libra...136 days ago
Severus: a somatic structural variation (SV) caller for long reads
Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching tumor/normal analysis, sup...mplete somatic and germline calls. Severus takes advantage of long-read phasi...97 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
Alvis, a simple command line tool that can generate visualisations for a number of com...ety of alignment formats and will output production ready vector images. Additionally, Alvis will highlight potentially chimeric reads or c...59 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your...analyses quicker! Bactopia was inspired by Staphopia, a workflow we (Tim Read and m...28 days ago
BEAR: Better Emulation for Artificial Reads
Created by Stephen Johnson, Brett Trost, Dr. Jeffrey R. Long, Dr. Anthony Kusalik University of Saskatchewan,...easy-to-use collection of scripts for generating simulated WGS metagenomic reads with read lengt...2 hours ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, coverin...ique characteristics: Co-assembly procedure with read mapping for estimation of the...as. Metatranscriptomic support via mapping of cDNA reads agai...2 hours ago