KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data...ned gene identifier followed by, if any, the assigned K number. The mapping is performed through the K nu...2030 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.2029 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)2024 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome...to add ‐‐large option to your command! A short list of the new features (see...s and contiguity for a given genome and set of reads)...2020 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correc...t determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short r...2010 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short r...2009 days ago
2009 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from...nces using high-throughput sequencing reads. It is based on the novel ide...idly determining the compatibility of reads with targets, without the nee...minutes to build. Pseudoalignment of reads p...2004 days ago
2003 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be...sic quality checks on the input data How to run a short read assembler on Illumina da...improve the accuracy of a long read assembly using short reads...1991 days ago