Tags: Bioinformatics, Analysis, Progressive Cactus, Genome
2729 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational to...Tags: Bioinformatics, Plot, Synteny, Genome, Viewer, Comparative genomics
2728 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, YAHA
2726 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, SpeedSeq
2726 days ago
Tags: Bioinformatics, Assembly, PANDASEQ, Genome, NGS, Illumina
2723 days ago
Tags: Bioinformatics, Tool, Installation, Compile, HPC, Software, EasyBuild
2719 days ago
Tags: Bioinformatics, Cgaln, Alignment, Genome
2693 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank queuing model. Imagine the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the ability to chunk the next n elements from the in...Tags: Bioinformatics, Programming, Perl, MCE, Parallel, Core, Thread, Fork
2715 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees...Tags: Bioinformatics, Tree, Phylogeny, Visualization, iTOL
2715 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Harvest, Alignment, Tools
2715 days ago