CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic...icted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on...1509 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This t...g reads against a draft assembly. It outperforms graph-based methods...a, and can be competitive with state-of-the-art signal-based met...1508 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visu...pdated to Ensembl 96. New bacterial and fungal genomes based on STRIN...d othe pathways for over 315 plant and animal species, based on...1493 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based glo...1491 days ago
1480 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcr...identification and quantification using only RNA-seq data. It assembles novel TSSs based onl...1422 days ago
1422 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S...ot, heatmap, …).The bioinformatics treatment is based on Vsear...te and fast [Wescott 2015].The statistical analysis is based on...1418 days ago
1411 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in whic...ove binding affinity, optimize stability, or manipulate function. The framework is based on...1384 days ago