Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2409 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing signifi...s. PLAST stands for Parallel Local Sequence Alignment Search Tool an...informatics. PLAST is a general purpose sequence comparison tool providing the...2407 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...antify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small dat...2406 days ago
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Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly...nteract with it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be perfo...2404 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k...than the recently published tool FLASH. When COPE is applied to real reads for genome a...2403 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Ill...Our performance evaluation results, in terms of correction quality and de novo genome a...2403 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderatel...olutionarily related regions of sequences in order to achieve the best...ticularly useful in comparative sequence analysis for identifying cons...2402 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, re...phylogenetic trees. Tools Parsnp - Core-genome a...2400 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer simi...rirty and the point of differences between pair of sequences. FOGSAA is a fast Global ali...eedy way taking the symbols from the given pair of sequences (protein or nucleotide) and...2400 days ago