Proksee: in-depth characterization and visualization of bacterial genomes
Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.422 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
ausarg/pipesnake is a bioinformatics best-practice analysis pipeli...g from short-read 'second-generation' sequencing data. The pipeline is...ontainers making installation trivial and r...hich makes it much easier to maintain and update software dependencies.135 days ago
99 days ago
A web-based tool for sequence alignment statistics and innovative visualization
AlignStatPlot, a new R package and online tool that is well-documented and easy-to usefor MSA and post-M...ool performs both traditional and cutting-edge analy-ses on sequencing data and generates new...sequence alignment statistics and innovative visualization of big data...92 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swif...ion of the Jaccard coefficient directly from raw sequencing reads and e...st, 303 Zea, 141 Ficus, 67 Oryza, and 43 Saccharum spontaneum sa...88 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
Bactopia is a flexible pipeline for complete analysis of bacter...opia, a workflow we (Tim Read and myself) released that is targ...hat we learned from Staphopia and user feedback, Bactopia was d...enhance the analysis of your seque...lable from Bioconda and Conda-Forge to make instal...26 days ago