FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as...1859 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1838 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates...iants from reference genomes and (ii) reads from both Illumina and Pacifi...le, paired-end, or mate-pair Illumina reads, as well as reads from Pacifi...imulations include sequencing errors, mapping qualities, multiplexing, and...1804 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It...lies. The package represents a complete pipeline: it takes raw PB / ONT reads a...1824 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in re...accharomyces cerevisiae, has many isolates currently being sequenced with long reads.&...1772 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the proces...ware co-design and hardware acceleration to significantly reduce the execution time of short s...1703 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not i...ror rate – they are essentially made of stitched-together pieces of long reads....1674 days ago
1655 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into pot...ocus. Its input can include not only alignments of short reads that can also be used by othe...nger sequences that have been assembled from those reads....1485 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy...NextCorrect can be used to correct TGS long reads with approximately 15% sequen...to construct a string graph with corrected reads....1641 days ago