Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigatio...but allows multiple visualizations of data within genomic regions using...plied visualizations. It also includes data from the Gene Expression...2188 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improve...2171 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo a...o assemble discreet 'targets' contained within next-generation shotgun sequence data. ARC decomplexifies the tradi...2171 days ago
nanofilt: Filtering and trimming of long read sequencing data
Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt2166 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcrip...SC package. Follow the tutorial to see how LSC works on some example data. Read the manual i...2164 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three alig...2159 days ago
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PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH),...tic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standar...2157 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from met...The mmgenome R package also facilitates effortless integration with additional data sources and hence should not...2156 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid...read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FMLRC will build an FM-index...2155 days ago