ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a nov...luding duplications, and (iv) providing seamless integration with the NCBI taxonomy datab...2328 days ago
Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, including: Ove...ation. Each of these presentations is generated using javascript from a common (JSON) data...2319 days ago
2317 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), an...910 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information conta...ed over six-fold, using moderate coverage (25-fold) Chromium data. We ex...arnessing the barcoding information contained in linked read data...2313 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that...2312 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data...2306 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge pro...g J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data...2297 days ago
2282 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs w...these network graphs from R. The main idea is that you should able to take an R data...2282 days ago