jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phyl...ulation and see detailed status and logging information; extract fasta sequence files from the leaf nodes of...2400 days ago
2400 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a c...strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a reference genome....2400 days ago
2396 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for oth...2396 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provide...bioinformatics concepts. The current version includes interactive modules for sequence alignment and phylogenetic tr...2395 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2394 days ago
1443 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific featu...p to produce in silico reads for a given reference genome. NanoSim is written in Python.... The source files and manual are available at the Genome S...2391 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facili...oring the 3D physical architecture of genomes. Delta takes Hi-C...ng domains and chromatin loops in the genome. It then generates a physical...ool which enhances the integration of genome t...2388 days ago