MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...ons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) without disrupting the underlying codon stru...1966 days ago
SDA: Long-read sequence and assembly of segmental duplications
Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences pro...1950 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...in the scientific interpretations and research work. The package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlink...1913 days ago
1911 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...c contig correction GFF lift-over Structural variant calling with and integrated version of Assemblytics Confidence scores associated with the grouping, localization, and orienta...1907 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1879 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...cific state, choosing from the ‘History’ display. Adding and updating PubMed IDs will prompt...ication title to confirm their submission. Gene Ontology (GO) terms are supported and GO ID auto-completi...1863 days ago
1846 days ago
gEVAL: Genome Evaluation Browser
...;allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to date assembly and identify...1846 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1842 days ago