ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data...2298 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association bet...form: (1) epigenome-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study; and (3) epigenome-wide assoc...2298 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualize...scripts and their ortholog information were derived from H-InvDB and its subdatab...2276 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental...6 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data...2271 days ago
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DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing...supports the reading and writing of phylogenetic data...ing some useful phylogenetic operations, such as data conver...bsp;. API documentation . Descriptions of data...2265 days ago
ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper at https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3927-82258 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipe...The pipeline was originally developed for Illumina data, but t...ty of the MIRA assembler, MITObim supports in principle also data...2250 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genom...2250 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of...sembling one. De novo estimates of genetic relatedness from next-gen sequencing data...2229 days ago