Results for "TE"
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...aligner. YAHA is as fast and accurate as BWA-SW at finding the sing...nt per query and is dramatically faster and more sensitive than both...select alignments, YAHA uses a directed acyclic graph to find the op...ailability: YAHA is currently supported on 64-bit Linux systems. Bin...2719 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lin...uinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation. Nat Meth (2015). d...
2719 days ago
- ...f amplification primers were used (e.g., to isolate a variable region of the 16S...in the overlapping region, the base with the better quality score is chosen.The...ssembled sequence between the primers and calculate the quality.5.Check for vario...
2716 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2711 days ago
Many-Core Engine (MCE) for Perl example
...line being the data and bank-tellers the parallel workers. MC...described here. MCE::Signal Temporary directory creation, cl...e native map function. MCE::Step Provides a parallel step im...s; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0...2708 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the d...e (up to several thousand leaves). Trees can be exported to several graphical formats...bitmap and vector based. There are several pre-computed trees available for display,...2708 days ago
- Harvest is a suite of core-genome alignment and visualization tools f...genomes, including variant calls, recombination detection, and phylogenetic trees....Core-genome alignment and analysis Gingr - Interactive visualization of align...
2708 days ago
- ...can also view everything in one file or contribute by reporting mistakes or send...(Frequently Asked Questions). You may also be interested in the Perl 6 design do...anguage. Documentation for the different but related Perl 5 language can be found...
2705 days ago
- Our basic strategy in building homology maps is to use...map "anchors." Given K genomes, the steps in the map construction are...with alignments being performed in protein space. Construct a graph w...es in this graph. These cliques are potential anchors to be used in th...
2702 days ago
FSA: Fast Statistical Alignment
...nly pairwise divergence estimates, FSA builds a multiple align...ble by the sequence annealing technique for constructing a mul...l methods for constructing better alignments: FSA uses mach...t Display), can display the intermediate alignments produced b...2702 days ago
