jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...mina reads, as well as reads from Pacific Biosciences These simulations include sequencing errors, mapping qualities, multiplexing, and optical/PCR duplicates. All outputs can be wr...1808 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...R Shiny applications. Some of the prominent features of the package are: visualizing polyploidy simultaneously on the same plot. annotating groups of elements as distinct colo...1765 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...ighly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable results: super-scaffold N50 values in the...1783 days ago
Apollo: a sequence annotation editor
...uences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting each annotation. Apoll...1776 days ago
1738 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...assembly correction GFF lift-over Structural variant calling with and integrated version of Assemblytics Confidence scores associated with the grouping, localization, and orienta...1715 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...ely, you can install Gooey by cloning the project to your local directory git clone https://github.com/chriskiehl/Gooey.git run setup.py python setup.py install1710 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to de...1704 days ago
1684 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report f...om your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts...1294 days ago