PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and...907 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads...ix-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad...the barcoding information contained in linked read data for...2310 days ago
Mesquite: A modular system for evolutionary analysis
...gned to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2303 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...sp;(Thanks to pandoc!) Please cite: Steinegger M and Soeding J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology, doi:...2294 days ago
2279 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript....network graphs from R. The main idea is that you should able to take an R data fra...2279 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
...that provides an intuitive user interface for phylogenetic analyses and data visualization. It has four distinct modes that are useful for different types of phylogenetic analysis: RAxML, File Converter, MS Co...2295 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/p...e (meplotype) association study; and (3) epigenome-wide association meta-analysis.2295 days ago
SciLifeLab tutorial for bioinformatics analysis !
...ppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February - Uppsala ...2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Uppsala...2268 days ago
2266 days ago