PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome...2212 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment...dence of assembling the resulting sequences is achieved by using a known genome, such as human genome,...2212 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome an...tion. We use minimap version 2 to align the two genomes...2212 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-c...ost completely recovered and equivalent to those in a complete genome,...2211 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information...selection process. It can also analyze multiple genomes at one run and generates con...e comparison of enzyme(s) performance across the genomes...2211 days ago
2209 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...be used for effectively de novo assemblying large genomes. For example, on a 32-thread...GHz CPU , MECAT takes 9.5 days to assemble a human genome...2243 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further informatio...e J#. Chromosome-scale scaffolding of de novo genome...2240 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirel...y information for scaffolding de novo genome assemblies. FragScaff is comp...st, accurate chromosome-scale de novo genome assemblies without the need f...ange sequence information for de novo genome...2240 days ago
2239 days ago