2118 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web serve...users to interactively visualize their data in the form of heat maps thro...ariety of heat maps for many different data types and applications. Heatm...to interactively explore their numeric data values by hovering their curs...2104 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in E...now the only way to get it is to produce way too many assemblies on a good RNA data set, with several methods and...2104 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-g...Alternatively, if your scientific question is focused on only one aspect of the data (e.g. breakpoints), many read...2101 days ago
2101 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory...esults. Based on simulation and a real guppy RAD-seq data, we show that Rainbow is more...mpetent than the other tools in dealing with RAD-seq data2086 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional an...enerates annotations for each gene based on multiple databases about pathways, diseases...e, it can accept either gene list or gene expression data as input, and generates enric...2086 days ago
2080 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment o...e, exon-capture, and targeted capture data, it has been run on very larg...2080 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow eas...alization of variant call format (VCF) data. Functions are provided to ra...from and write to VCF files. Once VCF data is read into R a parser funct...tions provide visualization of genomic data. Once processing is complete...2080 days ago