SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infe...does not require prior sequencing of a reference genome: the same sequencing data...2228 days ago
2227 days ago
2222 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like...mind. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., &...2222 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Exte...igs can be individual reads from a subset of the paired-read dataset, no...d reads from sequencing technologies that provide non-paired data,...2216 days ago
2216 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and track...red to explore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data...2216 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assem...takes 9.5 days to assemble a human genome based on 54x SMRT data, which...line, FALCON and Canu(v1.3) in five real datas...2247 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including...2244 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach wi...riants. We benchmarked LAMSA with simulated and real datasets ha...n-commercial use. LAMSA is mainly designed by Bo Liu &...2243 days ago