FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FML...2156 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together...2155 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for pre...formance interactivity over very large or streaming datasets. Bokeh can help anyone wh...nd easily create interactive plots, dashboards, and data appl...2155 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2150 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced gen...apped mates of mapped short reads. Our results on bacterial, fungal and insect data sets...2146 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently...enerated with a given GC content. It can consist of several chromosomes, whose structure is respected when drawing rea...2144 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and e...Mulan supports two-way communication with the GALA database; alignments of multiple s...rated and overlaid with extensive genome annotation data usin...2142 days ago
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STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability cha...ty of features at different levels of sequence and structure properties. The unique charac...mbination of sequence profiles with low-resolution structure models from protein structure...2125 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for...atures are: Import of mapped data from mapped data (BAM/SAM/bow...a sets Statistical analysis of data to f...2124 days ago