CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software...sitory on Source Forge is an internet resource for scientists aroun...from the oceans (Sargasso Sea in 2004 and Global Ocean Sampling in 2007...-generation Sanger sequencing machines and...2575 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262550 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net...2550 days ago
2534 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based...r the development of prediction model. The stand...2512 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classif...ion (epsilon-SVR, nu-SVR) and distribution estimation (one-...s paper:R.-E. Fan, P.-H. Chen, and C.-J. Lin. Working set s...for unbalanced data Both C++ and Java sources GUI&n...;PHP interfaces. C# .NET...2496 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contaminatio...scaffolds that contain both bacterial and algal sequences. This or simi...us constitute a useful complement to standard bioinformatics analyses pr...d via SourceForge (https://sourceforge.net...2383 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a...community will need to design and build a suite of tools specif...nipulate, organize, summarize and visualize MinION nanopore seq...R at http://sourceforge.net/projects/rpore/ . A tutorial and further information are avail...2383 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs us...ps using BWA mem. Perform correction of contigs using pilon and...2383 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...lly by minimap) as input and outputs an assembly graph in...s 9 out of 12 PacBio datasets and 3 out of 4 ONT datasets into...ly with N50 1.61Mb. This dotter plot gives a global v...iasm assembly (on the X axis) and the HGAP3 assembly (on Y). Th...q reads.fq # Install minimap and...2379 days ago