Results for "PacBio read correction"
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Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mappe...2906 days ago
- Function WiseScaffolder is a stand-alone semi-automatic...to build gapped scaffolds or usable as a common thread for the manual improvement of...e-pair library preprocess allows the detection and correction of chimerae, the estimation o...
2906 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotypi...eterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A m...
2851 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to trai...
2679 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used t...teny, in the context of the entire sequences and their annotation. It can read compl...
2850 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence asse...rom paired-end/mate-pair/long reads to order and orient the inte...the paired-end/mate-pair/long reads (for further details see Gao...the wrapper script OPERA-long-read that enables scaffolding with...tion sequencing technologies (PacBio or...2848 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-mappi...2827 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read the "...
2827 days ago
- Development of cancer is driven by somatic alterations,...cated cohort-based statistics is incorporated with correction for covariates that influence...e a breakpoint gene. In addition, multiple testing correction is integrated to reveal recur...
2206 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for...all short RNA) expression using short-read deep sequencing data. In its...specially adapted for the analysis of reads generated with the Illumina...iRNA) expression profiles and cluster reads usin...
2822 days ago
