SALSA: A tool to scaffold long read assemblies with Hi-C
...t to use the old version, it can be found in the old_salsa branch. To use the latest version, first run the following commands: cd SALSA make To run the code, you will ne...2203 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam #...2198 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats The author has reimplemented this tool in C++ with multithreading support to make it much faster. The new tool...2189 days ago
1588 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
...eh can help anyone who would like to quickly and easily create interactive plots, dashboards, and data applications. To get started using Bokeh to make your visualizations, see the&...2147 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...profiles with low-resolution structure models from protein structure prediction, which helps enhance the robustness and accuracy of the method and make it applicable to various prot...2116 days ago
BamView: a free interactive display of read alignments in BAM data files
...BAM index file should have the same name as the BAM file but with a '.bai' suffix. Multiple BAM files can be loaded and overlaid in the viewer. To make this easier BamView will read...2056 days ago
2049 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...(NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is able to make many-views from the same prim...2000 days ago
1695 days ago