Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...ence rearrangements (such as inversions and reshuffling) in any of the species. It combines refine ...e conservation profiles for evolutionarily distant and closely related species. Input formats, automated da...2522 days ago
orthodotter: Synteny plots (oxford grid)
...on an oxford grid. -f <file> : input file, containing orthologous genes, default is stdin species chr-name start end species chr-name start end -t...2502 days ago
2405 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...ensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evo...displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range...2400 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2392 days ago
HTTDB - Horizontally transferred transposable elements database
...osition inside genomes, they can frequently transpose the species boundaries and consequently migrate from one species to another. Such phenomenon i..., there has been no easy way to visualise each TE or host species, and should be further analys...2335 days ago
2312 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...ome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified by PLAR. Available here. Species Assembly Code...890 days ago
2256 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...st-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any ot...2230 days ago