478 days ago
Proksee: in-depth characterization and visualization of bacterial genomes
Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.420 days ago
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities...is based on the popular ggplot2 package, thus allowing customization of plots and the generation...202 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for ph...construction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextf...ial and results highly reproducible. The Nextflow D...133 days ago
A web-based tool for sequence alignment statistics and innovative visualization
AlignStatPlot, a new R package and online tool that is well-documented and easy-to usefor M...post-MSA analysis. This tool performs both traditional and cutting-edge analy-ses on sequencing...90 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing...86 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopi...and speed in mind from the start. Bactopia uses Nextf...r own datasets to further enhance the analysis of your sequencing...24 days ago