SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...network. A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computation...roved to be scalable, so that its allows the study of very large datasets. SiLiX is already included in...2035 days ago
2029 days ago
Biotite: A general framework for computational biology
...of four sub packages: sequence, structure, databases, and application. The sequence and structure modules serve for t...ysis of sequence and structural data analysis respectively, databa...es on working with sequence and structure data and supports various file formats...2029 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding p...2026 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with...2021 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypothe...ellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose, the gene...2019 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determ...ach iteration by incorporating knowledge gathered from previous iterations via data-driv...2014 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).For more information about...2014 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data form...2014 days ago
2014 days ago