Results for "R"
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Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each eleme...t n elements from the input stream to the next available work...on information orderly with zero involvement by the manager p...th MCE::Flow, MCE::Stream can run multiple code blocks in par...2708 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features...ilable in other tree viewers, and offers a novel circular tree layout...aphical formats, both bitmap and vector based. There are several pre...2708 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, includi...d phylogenetic trees. Tools Parsnp - Core-genome alignme...itation Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harves...
2708 days ago
- ...ficial documentation of the Perl 6 programming language is now published! Besides online browsing and searching, you can...in one file or contribute by reporting mistakes or sending p...rehensive list of Perl 6 resources, including tutorials, how-...
2706 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps...e a combination of both exon predictions (e.g. Genscan) and a...in this graph. These cliques are potential anchors to be used...
2702 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous pr...gabase-long sequences. FSA introduces several novel methods f...ors and projecting them with transitive anchoring. It then st...2702 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA p...r features, the newly implemented methods allow for: (i) analyses on multiple dat...2702 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inferenc...om the Downloads page. FineSTRUCTURE R scripts, a facility f...e your genome. Sorry if you were misled by the punchy name! A...2695 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.be...otate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R...le of reference contig lengths/chromosome names --heatmap, -h...annotations (description below) --bars, -b...
2695 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Can...enomics, Mutation Annotation Format (MAF) is being widley acce...ject has seqenced over 30 different cancers with sample size o...MAF files in an efficient manner either from TCGA sources or a...
2692 days ago
