Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacteria...e guided through the genome assembly starting with data quality control, through to b...How to perform basic quality checks on the input data How to run a short read asse...1991 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics softwar...design, high quality molecule depiction, molecular database tools supporting substruc...ased virtual screening, bioactivity prediction and data visualization. Molinspiration...1991 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representation...nbsp;Gene Ontology (GO) annotated interaction data maintained by the BioGRI...1991 days ago
1990 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by...1989 days ago
1989 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersecti...queries. The matrix layout enables the effective representation of associated data, such as the number of elemen...1982 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, wh...y variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish between diploi...1980 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining m...p;EM algorithm Mining candidate STR alleles from population-scale sequencing data Employing a specialized hidd...1944 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the g...r distruct from a Dos prompt in Windows. It will produce a figure using the data that are represented in the C...1927 days ago