1994 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set i...d queries. The matrix layout enables the effective representation of associated data, such as the number of elemen...1987 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from sp...idy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish between diploi...1985 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of ob...bsp;EM algorithm Mining candidate STR alleles from population-scale sequencing data Employing a specialized hidd...1949 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced...or distruct from a Dos prompt in Windows. It will produce a figure using the data that are represented in the C...1932 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale o...mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. Th...1928 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Scha...the following features: Good performance. On a MacBook Pro using Arabidopsis data, pseudochromosome constructio...1908 days ago
1847 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1843 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1809 days ago