LSC :a long read error correction tool
...hese simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the&nbs...ge. Follow the tutorial to see how LSC works on some example data. Read the manual if an...2163 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...l pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three alig...generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV...2159 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
Long read alignment analysis. Generate a reports on sequence alignments for...r patterns, annotations and rarefraction curve analysis. The most basic analysis only...patible xhtml to visualize/share/store/extract analysis results. https://f1000resear...2158 days ago
2158 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleot...ic status and clonality. PureCN is designed for targeted short read sequencing data, in...2156 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenomes. It builds on the&nbs...The mmgenome R package also facilitates effortless integration with additional data sou...2156 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FM...2155 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together...2155 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for pre...formance interactivity over very large or streaming datasets. Bokeh can help anyone wh...nd easily create interactive plots, dashboards, and data app...2155 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2149 days ago