molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...ing and drug design, high quality molecule depiction, molecular database tools supporting substructure and similarity searches....so fragment-based virtual screening, bioactivity prediction and data visualization. Molinspiration tool...1996 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representation... Gene Ontology (GO) annotated interaction data main...1996 days ago
1996 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph...1994 days ago
1994 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layou...queries. The matrix layout enables the effective representation of associated data, suc...1987 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidi...dy variation is observed. Specifically, nQuire uses next-generation sequencing data to d...1985 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...utomatic solution to align protein-coding gene datasets containing non-functional...genes) without disrupting the underlying codon structure. It has also proved usef...n detecting undocumented frameshifts in public database sequences and in aligning next...1967 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genoty...sp;EM algorithm Mining candidate STR alleles from population-scale sequencing data Emp...1949 days ago
DISTRUCT: a program for the graphical display of population structure
...oduced by the genetic clustering program structure or by other similar...nts in the same form as used in "Genetic structure of human populations" Sc...n Windows. It will produce a figure using the data that are represented in the Centra...1932 days ago