ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts...Linux/Unix system. If you want to compare bacterial genomes and calculate their average...run this program directly. Or you could send us the genome sequence by email. Then we wi...2060 days ago
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
NovoGraph: building whole genome graphs from long-read-based de novo assemblies...algorithmically novel approach to construct a genome graph representation of long-...hen provide a proof of principle by creating a genome graph of seven ethnically-div...2058 days ago
SIMBA: a Genome Assembly Project Management System
SIMBA, SImple Manager for Bacterial Assemblies, is a We...terface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneratio...2045 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replica...GWASpro provides an interface that significantly reduces the learning curve for new GW...2037 days ago
2033 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It o...tion of a set of regions with other sets of regions, functions defined over the genome or essentially any user defin...2033 days ago
Genome sequence-based (sub-)species delineation.
The GGDC web service reports digital DDH for a universal and accurate delineatio...fferences in genomic G+C content. http://ggdc.dsmz.de/ggdc_background.php# Genome-to-Genome Distance Calculator 2.1 http...2032 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to r...the lines Create smart, automatic annotations for genomes, based on gene names Add a...2032 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI a...ow researchers to calculate OrthoANI values between genomes of interest without unfamili...2032 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a sin...2031 days ago