Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of...to create specific group of individuals of known ancestry is called as mapping population. Many types of mapping population exist. Here we wil...304 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-r...138 days ago
CLAW: Chloroplast Long-read Assembly Workflow
CLAW (Chloroplast Long-read Assembly Workflow) is an mostly-automated Snakemake-based workflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads,...138 days ago
Severus: a somatic structural variation (SV) caller for long reads
Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching tumor/normal analysis, supports multiple tumor samples, and produ...100 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads a...91 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks...n ready vector images. Additionally, Alvis will highlight potentially chimeric reads o...61 days ago
30 days ago
Lorikeet: Strain resolver for metagenomics
Lorikeet is a within-species variant analysis pipeline for metagenomic communities that utilizes both long and short reads....2 days ago
BEAR: Better Emulation for Artificial Reads
Created by Stephen Johnson, Brett Trost, Dr. Jeffrey R. Long, Dr. Anthony Kusalik University of Saskatchewan, Depa...an easy-to-use collection of scripts for generating simulated WGS metagenomic reads w...2 days ago